Botswana AMR Implementation Guide
0.1.0 - 0.1.0

Botswana AMR Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Botswana AMR Organism Identification Methods - XML Representation

Draft as of 2026-03-13

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<ValueSet xmlns="http://hl7.org/fhir">
  <id value="botswana-amr-identification-method-vs"/>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet botswana-amr-identification-method-vs</b></p><a name="botswana-amr-identification-method-vs"> </a><a name="hcbotswana-amr-identification-method-vs"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href="http://www.snomed.org/"><code>http://snomed.info/sct</code></a><span title="Version is not explicitly stated. No matching Code System found"> version Not Stated (use latest from terminology server)</span><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href="http://snomed.info/id/258066000">258066000</a></td><td>Automated identification system</td></tr><tr><td><a href="http://snomed.info/id/252398009">252398009</a></td><td>Biochemical identification</td></tr><tr><td><a href="http://snomed.info/id/87273009">87273009</a></td><td>Manual method</td></tr></table></li><li>Include these codes as defined in <a href="CodeSystem-botswana-amr-local-method-cs.html"><code>http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-method-cs</code></a><span title="Version is not explicitly stated, which means it is fixed to the version provided in this specification"> version &#x1F4E6;0.1.0</span><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href="CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-vitek">vitek</a></td><td>Vitek automated system</td><td>bioMérieux Vitek automated identification and susceptibility testing system</td></tr><tr><td><a href="CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-phoenix">phoenix</a></td><td>Phoenix automated system</td><td>BD Phoenix automated identification and susceptibility testing system</td></tr><tr><td><a href="CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-api">api</a></td><td>API biochemical strips</td><td>bioMérieux API manual biochemical identification strips</td></tr><tr><td><a href="CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-manual">manual</a></td><td>Manual biochemical testing</td><td>Traditional manual biochemical identification methods</td></tr></table></li></ul></div>
  </text>
  <url
       value="http://bw.health.gov/fhir/amr/ValueSet/botswana-amr-identification-method-vs"/>
  <version value="0.1.0"/>
  <name value="BotswanaAMRIdentificationMethodVS"/>
  <title value="Botswana AMR Organism Identification Methods"/>
  <status value="draft"/>
  <date value="2026-03-13T21:27:21-04:00"/>
  <publisher value="University of Botswana Partnership"/>
  <contact>
    <name value="University of Botswana Partnership"/>
    <telecom>
      <system value="url"/>
      <value value="https://github.com/Dokotela/bw-amr-ig"/>
    </telecom>
  </contact>
  <description
               value="Methods used for organism identification in Botswana AMR surveillance"/>
  <compose>
    <include>
      <system value="http://snomed.info/sct"/>
      <concept>
        <code value="258066000"/>
        <display value="Automated identification system"/>
      </concept>
      <concept>
        <code value="252398009"/>
        <display value="Biochemical identification"/>
      </concept>
      <concept>
        <code value="87273009"/>
        <display value="Manual method"/>
      </concept>
    </include>
    <include>
      <system
              value="http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-method-cs"/>
      <concept>
        <code value="vitek"/>
        <display value="Vitek automated system"/>
      </concept>
      <concept>
        <code value="phoenix"/>
        <display value="Phoenix automated system"/>
      </concept>
      <concept>
        <code value="api"/>
        <display value="API biochemical strips"/>
      </concept>
      <concept>
        <code value="manual"/>
        <display value="Manual biochemical testing"/>
      </concept>
    </include>
  </compose>
</ValueSet>