Botswana AMR Implementation Guide
0.1.0 - 0.1.0

Botswana AMR Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Botswana AMR Organism Identification Methods - JSON Representation

Draft as of 2026-03-13

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{
  "resourceType" : "ValueSet",
  "id" : "botswana-amr-identification-method-vs",
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet botswana-amr-identification-method-vs</b></p><a name=\"botswana-amr-identification-method-vs\"> </a><a name=\"hcbotswana-amr-identification-method-vs\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href=\"http://www.snomed.org/\"><code>http://snomed.info/sct</code></a><span title=\"Version is not explicitly stated. No matching Code System found\"> version Not Stated (use latest from terminology server)</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"http://snomed.info/id/258066000\">258066000</a></td><td>Automated identification system</td></tr><tr><td><a href=\"http://snomed.info/id/252398009\">252398009</a></td><td>Biochemical identification</td></tr><tr><td><a href=\"http://snomed.info/id/87273009\">87273009</a></td><td>Manual method</td></tr></table></li><li>Include these codes as defined in <a href=\"CodeSystem-botswana-amr-local-method-cs.html\"><code>http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-method-cs</code></a><span title=\"Version is not explicitly stated, which means it is fixed to the version provided in this specification\"> version &#x1F4E6;0.1.0</span><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-vitek\">vitek</a></td><td>Vitek automated system</td><td>bioMérieux Vitek automated identification and susceptibility testing system</td></tr><tr><td><a href=\"CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-phoenix\">phoenix</a></td><td>Phoenix automated system</td><td>BD Phoenix automated identification and susceptibility testing system</td></tr><tr><td><a href=\"CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-api\">api</a></td><td>API biochemical strips</td><td>bioMérieux API manual biochemical identification strips</td></tr><tr><td><a href=\"CodeSystem-botswana-amr-local-method-cs.html#botswana-amr-local-method-cs-manual\">manual</a></td><td>Manual biochemical testing</td><td>Traditional manual biochemical identification methods</td></tr></table></li></ul></div>"
  },
  "url" : "http://bw.health.gov/fhir/amr/ValueSet/botswana-amr-identification-method-vs",
  "version" : "0.1.0",
  "name" : "BotswanaAMRIdentificationMethodVS",
  "title" : "Botswana AMR Organism Identification Methods",
  "status" : "draft",
  "date" : "2026-03-13T21:27:21-04:00",
  "publisher" : "University of Botswana Partnership",
  "contact" : [
    {
      "name" : "University of Botswana Partnership",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://github.com/Dokotela/bw-amr-ig"
        }
      ]
    }
  ],
  "description" : "Methods used for organism identification in Botswana AMR surveillance",
  "compose" : {
    "include" : [
      {
        "system" : "http://snomed.info/sct",
        "concept" : [
          {
            "code" : "258066000",
            "display" : "Automated identification system"
          },
          {
            "code" : "252398009",
            "display" : "Biochemical identification"
          },
          {
            "code" : "87273009",
            "display" : "Manual method"
          }
        ]
      },
      {
        "system" : "http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-method-cs",
        "concept" : [
          {
            "code" : "vitek",
            "display" : "Vitek automated system"
          },
          {
            "code" : "phoenix",
            "display" : "Phoenix automated system"
          },
          {
            "code" : "api",
            "display" : "API biochemical strips"
          },
          {
            "code" : "manual",
            "display" : "Manual biochemical testing"
          }
        ]
      }
    ]
  }
}