Botswana AMR Implementation Guide
0.1.0 - 0.1.0

Botswana AMR Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

CodeSystem: Botswana AMR Local Organism Codes

Official URL: http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-organism-cs Version: 0.1.0
Draft as of 2026-03-13 Computable Name: BotswanaAMRLocalOrganismCS

Local codes for organism combinations and complex designations used in Botswana AMR surveillance

This Code system is referenced in the content logical definition of the following value sets:

This code system http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-organism-cs defines the following codes:

CodeDisplay
acinetobacter-baumannii-complex Acinetobacter baumannii complex
aeromonas-hydrophila-punctata Aeromonas hydrophila/punctata
alcaligenes-faecalis-subsp-faecalis Alcaligenes faecalis subsp. faecalis
brevundimonas-diminuta-vesicularis Brevundimonas diminuta/Brevundimonas vesicularis
burkholderia-cepacia-group Burkholderia cepacia group
cedecia-lapagei Cedecia lapagei
cronobacter-sakazakii-group Cronobacter sakazakii group
dermacoccus-nishinomiyaensis-kytococcus-sedentarius Dermacoccus nishinomiyaensis/Kytococcus sedentarius
enterococcus-spp Enterococcus spp.
klebsiella-pneumoniae-subsp-pneumoniae Klebsiella pneumoniae subsp. pneumoniae
klebsiella-spp Klebsiella spp.
leuconostoc-mesenteroides-subsp-cremoris Leuconostoc mesenteroides subsp. cremoris
leuconostoc-mesenteroides-subsp-dextranicum Leuconostoc mesenteroides subsp. dextranicum
methylobacterium-spp Methylobacterium spp.
moraxella-group Moraxella group
morganella-morganii-subsp-morganii Morganella morganii subsp. morganii
morganella-morganii-subsp-sibonii Morganella morganii subsp. sibonii
myroides-spp Myroides spp.
neisseria-animaloris-zoodegmatis Neisseria animaloris/Neisseria zoodegmatis
pandoraea-spp Pandoraea spp.
pantoea-spp Pantoea spp.
pseudomonas-spp Pseudomonas spp.
salmonella-group Salmonella group
serratia-liquefaciens-group Serratia liquefaciens group
shigella-group Shigella group
staphylococcus-cohnii-subsp-cohnii Staphylococcus cohnii subsp. cohnii
staphylococcus-hominis-subsp-hominis Staphylococcus hominis subsp. hominis
streptococcus-constellatus-subsp-pharyngis Streptococcus constellatus subsp. pharyngis
streptococcus-infantarius-subsp-coli Streptococcus infantarius subsp. coli
streptococcus-mitis-oralis Streptococcus mitis/Streptococcus oralis
vagococcus-fluviali Vagococcus fluviali
yersinia-enterocolitica-frederiksenii Yersinia enterocolitica/Yersinia frederiksenii