Botswana AMR Implementation Guide
0.1.0 - 0.1.0

Botswana AMR Implementation Guide - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: Example Organism - Escherichia coli (Isolate 1) - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="ExampleOrganismEcoli"/>
  <meta>
    <profile
             value="http://bw.health.gov/fhir/amr/StructureDefinition/botswana-amr-organism-observation"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation ExampleOrganismEcoli</b></p><a name="ExampleOrganismEcoli"> </a><a name="hcExampleOrganismEcoli"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-botswana-amr-organism-observation.html">Botswana AMR Organism Identification Observation</a></p></div><p><b>identifier</b>: isolate-1</p><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://loinc.org 18725-2}">Microbiology studies (set)</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 634-6}">Bacteria identified in Specimen by Aerobe culture</span></p><p><b>subject</b>: <a href="Patient-ExamplePatientMotswana.html">Keabetswe Motswana  Female, DoB: 1981-05-14</a></p><p><b>effective</b>: 2026-03-11 09:00:00+0200</p><p><b>value</b>: <span title="Codes:{http://snomed.info/sct 112283007}">Escherichia coli</span></p><p><b>method</b>: <span title="Codes:{http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-method-cs vitek}">Vitek automated system</span></p><p><b>specimen</b>: <a href="Specimen-ExampleSpecimenUrine.html">Specimen: identifier = PMH-2026-U4421; type = Urine</a></p><p><b>hasMember</b>: </p><ul><li><a href="Observation-ExampleSusceptEcoliAmpicillin.html">Observation Ampicillin [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSusceptEcoliAmoxClav.html">Observation Amoxicillin+Clavulanate [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSusceptEcoliCeftriaxone.html">Observation Ceftriaxone [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSusceptEcoliCiprofloxacin.html">Observation Ciprofloxacin [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSusceptEcoliGentamicin.html">Observation Gentamicin [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSusceptEcoliTmpSmx.html">Observation Trimethoprim+Sulfamethoxazole [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSusceptEcoliNitrofurantoin.html">Observation Nitrofurantoin [Susceptibility] by Minimum inhibitory concentration (MIC)</a></li><li><a href="Observation-ExampleSpecialTestEcoliEsbl.html">Observation Extended spectrum beta lactamase [Presence] in Isolate</a></li></ul></div>
  </text>
  <identifier>
    <value value="isolate-1"/>
  </identifier>
  <status value="final"/>
  <category>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/observation-category"/>
      <code value="laboratory"/>
      <display value="Laboratory"/>
    </coding>
  </category>
  <category>
    <coding>
      <system value="http://loinc.org"/>
      <code value="18725-2"/>
      <display value="Microbiology studies (set)"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="634-6"/>
      <display value="Bacteria identified in Specimen by Aerobe culture"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/ExamplePatientMotswana"/>
  </subject>
  <effectiveDateTime value="2026-03-11T09:00:00+02:00"/>
  <valueCodeableConcept>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="112283007"/>
      <display value="Escherichia coli"/>
    </coding>
  </valueCodeableConcept>
  <method>
    <coding>
      <system
              value="http://bw.health.gov/fhir/amr/CodeSystem/botswana-amr-local-method-cs"/>
      <code value="vitek"/>
      <display value="Vitek automated system"/>
    </coding>
  </method>
  <specimen>🔗 
    <reference value="Specimen/ExampleSpecimenUrine"/>
  </specimen>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliAmpicillin"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliAmoxClav"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliCeftriaxone"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliCiprofloxacin"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliGentamicin"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliTmpSmx"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSusceptEcoliNitrofurantoin"/>
  </hasMember>
  <hasMember>🔗 
    <reference value="Observation/ExampleSpecialTestEcoliEsbl"/>
  </hasMember>
</Observation>